PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24381
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 196aa    MW: 21583.9 Da    PI: 5.5914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24381genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-052951123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C++ Fs+   L  H++ H
  Tp57577_TGAC_v2_mRNA24381 29 YECNFCKRGFSNAQALGGHMNIH 51
                               99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-72656No hitNo description
Gene3DG3DSA:3.30.160.603.1E-52755IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6142956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MESDQCDQGG GSGGDDKDGL KQVTNLRSYE CNFCKRGFSN AQALGGHMNI HRKDKAKLKQ  60
QSSNLEQGNS SDQDLNKLLP IFLSSSNIVL PQKQDQHVPS RSEEILVIDH TRQQLPLFSE  120
SPTKIEMQIQ QGGQIHQREI TTTTATTVTA TTTTITQEAL LLSNDQDSSL ELDLELRLGS  180
EPHDSSKPTG TRKFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456154.16e-67transcriptional regulator superman protein
TrEMBLA0A072UWD47e-67A0A072UWD4_MEDTR; Transcriptional regulator superman protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-17C2H2 family protein